| Pos. | Rider | Team | Lap time | Km/h | Gap |
|---|---|---|---|---|---|
| 1 | Jorge LORENZO | Fiat Yamaha Team | 1′41.899 | 324.032 | |
| 2 | Andrea DOVIZIOSO | Repsol Honda Team | 1′42.573 | 322.966 | 0.674 |
| 3 | Valentino ROSSI | Fiat Yamaha Team | 1′42.810 | 325.595 | 0.911 |
| 4 | Dani PEDROSA | Repsol Honda Team | 1′43.049 | 328.867 | 1.150 |
| 5 | Randy DE PUNIET | LCR Honda MotoGP | 1′43.316 | 322.388 | 1.417 |
| 6 | Colin EDWARDS | Monster Yamaha Tech 3 | 1′43.409 | 320.950 | 1.510 |
| 7 | Casey STONER | Ducati Marlboro Team | 1′43.496 | 326.086 | 1.597 |
| 8 | James TOSELAND | Monster Yamaha Tech 3 | 1′43.628 | 316.622 | 1.729 |
| 9 | Niccolo CANEPA | Pramac Racing | 1′43.635 | 322.580 | 1.736 |
| 10 | Nicky HAYDEN | Ducati Marlboro Team | 1′43.658 | 322.773 | 1.759 |
| 11 | Chris VERMEULEN | Rizla Suzuki MotoGP | 1′43.682 | 316.808 | 1.783 |
| 12 | Alex DE ANGELIS | San Carlo Honda Gresini | 1′43.726 | 322.677 | 1.827 |
| 13 | Yuki TAKAHASHI | Scot Racing Team MotoGP | 1′43.772 | 320.094 | 1.873 |
| 14 | Sete GIBERNAU | Grupo Francisco Hernando | 1′43.799 | 320.000 | 1.900 |
| 15 | Marco MELANDRI | Hayate Racing Team | 1′43.840 | 322.291 | 1.941 |
| 16 | Loris CAPIROSSI | Rizla Suzuki MotoGP | 1′43.857 | 321.237 | 1.958 |
| 17 | Mika KALLIO | Pramac Racing | 1′43.969 | 326.975 | 2.070 |
| 18 | Toni ELIAS | San Carlo Honda Gresini | 1′44.295 | 321.715 | 2.396 |
| 19 | Gabor TALMACSI | Scot Racing Team MotoGP | 1′46.844 | 313.862 | 4.945 |
Saturday, June 13th, 2009